PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_29608
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family LSD
Protein Properties Length: 155aa    MW: 17065.2 Da    PI: 8.4912
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_29608genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.54.4e-13731125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C+gCrt+L YPrGA sV+Ca+C+ V
  PEQU_29608  7 CSGCRTPLLYPRGAASVCCAICNMV 31
                ***********************98 PP

2zf-LSD141.42.4e-134468125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggC++lL+Y rGA+ VRC++C+t+
  PEQU_29608 44 CGGCQILLMYARGASTVRCSCCNTI 68
                ***********************97 PP

3zf-LSD145.71.1e-14104126123
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCd 23 
                 Cg+Crt+L+YP+GApsV+Ca+C 
  PEQU_29608 104 CGHCRTTLMYPYGAPSVKCAVCR 126
                 **********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.4E-13434IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.6E-134169IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-114468IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.0E-11101130IPR005735Zinc finger, LSD1-type
PfamPF069439.4E-14104128IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MQSQLICSGC RTPLLYPRGA ASVCCAICNM VTAVPSSDRA QIICGGCQIL LMYARGASTV  60
RCSCCNTINV ARAADIILIF LLAIIILSHQ ASMAQANQVA QLSCGHCRTT LMYPYGAPSV  120
KCAVCRYITN VGVCQQFYFW RHLHTYHPIF MYFHV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007022938.11e-50LSD1 zinc finger family protein isoform 1
SwissprotP940771e-44LSD1_ARATH; Protein LSD1
TrEMBLA0A061G6R71e-50A0A061G6R7_THECC; LSD1 zinc finger family protein isoform 1
TrEMBLA0A0D2UIJ31e-50A0A0D2UIJ3_G
STRINGGSMUA_Achr7P00950_0016e-47(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.78e-45LSD family protein